pwd

'/Users/ud4/repos/GitHub/FATESFACE'

from IPython.display import Image, display
display(Image(filename='/Users/ud4/Downloads/PIDs.png',width=800))
display(Image(filename='/Users/ud4/Downloads/BiomassVsPIDs.png',width=800))
print ("Source : Knox 2023 (under review; https://d197for5662m48.cloudfront.net/documents/publicationstatus/129549/preprint_pdf/4892791c8be5504aff47afd6065937b7.pdf)")

Source : Knox 2023 (under review; https://d197for5662m48.cloudfront.net/documents/publicationstatus/129549/preprint_pdf/4892791c8be5504aff47afd6065937b7.pdf)

Index

Figure Set 1: FATES_NPP (for C-only at that site and RD/ECA) Figure Set 2: FATES_NPP Figure Set 3: FATES_STOREC Figure Set 3: FATES_STOREC_TF Figure Set 4: FATES_STOREN Figure Set 4: FATES_STOREN_TF Figure Set 5: FATES_STOREC_TF / FATES_STOREN_TF Figure Set 3: FATES_L2FR Figure Set 6: FATES_FROOTC_ALLOC / FATES_LEAFC_ALLOC Figure Set 7: FATES_FROOTC / FATES_LEAFC Figure Set 7: FATES_FROOTC Figure Set 7: FATES_LEAFC Figure Set 8: FATES_NO3UPTAKE Figure Set 8: FATES_NH4UPTAKE Figure Set 9: NET_NMIN Figure Set 9: GROSS_NMIN Figure Set10: SMIN_NO3_LEACHED Figure Set10: DENIT

Added features

• for a cell, you can choose which variables you are interested in for a single simulation.
• some plots from postprocessor

import os,glob
import xarray as xr
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import pyreadr # to read .rds files

path_in = "/Users/ud4/FATESMDS_analysis/outputs/runs/tests_alp/230309/"

# RD only

fnames={}
fnames["DUK_PIDA_Conly_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_US-DUK_trans.nc"
fnames["ORN_PIDA_Conly_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_US-ORN_trans.nc"

#fnames["DUK_PIDB_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_US-DUK_trans.nc"
#fnames["ORN_PIDB_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_US-ORN_trans.nc"

#fnames["DUK_PIDC_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_US-DUK_trans.nc"
#fnames["ORN_PIDC_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_US-ORN_trans.nc"

fnames["DUK_PIDA_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDA_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_US-ORN_trans.nc"

fnames["DUK_PIDB_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDB_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_US-ORN_trans.nc"

#"ORN_PIDC_RD" : Simulation missing *Running
fnames["DUK_PIDC_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDC_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_US-DUK_trans.nc"

fnames["DUK_PIDD_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDD_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_US-ORN_trans.nc"

#fnames["DUK_PIDzero_RD"] = : Simulation missing *Running
#fnames["ORN_PIDzero_RD"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r06122_Base_PIDzero_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r06122_Base_PIDzero_RD_US-ORN_trans.nc"

# Other global attributes for plots

logging_year= 1855

ds = {}

for idx, key in enumerate(fnames.keys()):
    print (key)
    ds[key] = xr.open_mfdataset(fnames[key],decode_times=True)
for idx, key in enumerate(ds.keys()):
    ds[key]['time'] =  pd.to_datetime(ds[key].time.values.astype(str))

DUK_PIDA_Conly_AgBgW
ORN_PIDA_Conly_AgBgW
DUK_PIDA_RD_AgBgW
ORN_PIDA_RD_AgBgW
DUK_PIDB_RD_AgBgW
ORN_PIDB_RD_AgBgW
DUK_PIDC_RD_AgBgW
ORN_PIDC_RD_AgBgW
DUK_PIDD_RD_AgBgW
ORN_PIDD_RD_AgBgW

Name of the single simulation that you want to investigate:

AW: PID-D for both Duke and ORNL, and PID-B for Duke.

sims = "DUK_PIDD_RD_AgBgW"
sims = "ORN_PIDD_RD_AgBgW"
#sims = "ORN_PIDB_RD_AgBgW"

The next cell is for the carbon only simuations for the chosen site

Figure Set 1

print ("\nFigure Set 1 >>>>>>")
# For multiple variables on a same plot

sim_conly = f"{sims.split('_')[0]}_PIDA_Conly_{sims.split('_')[-1]}"

key=sim_conly

vars_plot = (
"""
FATES_GPP
FATES_AUTORESP
FATES_NPP
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
#plt.close(fig)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
#plt.close(fig1)
#plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)

Figure Set 1 >>>>>>

<matplotlib.lines.Line2D at 0x179ffe9a0>

ts_data.year

<xarray.DataArray 'year' (year: 148)>
array([1850, 1851, 1852, 1853, 1854, 1855, 1856, 1857, 1858, 1859, 1860, 1861,
       1862, 1863, 1864, 1865, 1866, 1867, 1868, 1869, 1870, 1871, 1872, 1873,
       1874, 1875, 1876, 1877, 1878, 1879, 1880, 1881, 1882, 1883, 1884, 1885,
       1886, 1887, 1888, 1889, 1890, 1891, 1892, 1893, 1894, 1895, 1896, 1897,
       1898, 1899, 1900, 1901, 1902, 1903, 1904, 1905, 1906, 1907, 1908, 1909,
       1910, 1911, 1912, 1913, 1914, 1915, 1916, 1917, 1918, 1919, 1920, 1921,
       1922, 1923, 1924, 1925, 1926, 1927, 1928, 1929, 1930, 1931, 1932, 1933,
       1934, 1935, 1936, 1937, 1938, 1939, 1940, 1941, 1942, 1943, 1944, 1945,
       1946, 1947, 1948, 1949, 1950, 1951, 1952, 1953, 1954, 1955, 1956, 1957,
       1958, 1959, 1960, 1961, 1962, 1963, 1964, 1965, 1966, 1967, 1968, 1969,
       1970, 1971, 1972, 1973, 1974, 1975, 1976, 1977, 1978, 1979, 1980, 1981,
       1982, 1983, 1984, 1985, 1986, 1987, 1988, 1989, 1990, 1991, 1992, 1993,
       1994, 1995, 1996, 1997])
Coordinates:
  * year     (year) int64 1850 1851 1852 1853 1854 ... 1993 1994 1995 1996 1997

Rest of the results are for the chosen sim!

Figure Set 2

print ("\nFigure Set 2 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_GPP
FATES_AUTORESP
FATES_NPP
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)

    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

Figure Set 2 >>>>>>

<matplotlib.lines.Line2D at 0x17d252220>

Figure Set 3

print ("\nFigure Set 3 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_STOREC
FATES_STOREC_TF
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREC_TF"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREC/FATES_STOREC_TF")
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREC/FATES_STOREC_TF")
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

Figure Set 3 >>>>>>

<matplotlib.lines.Line2D at 0x17ee6e190>

Figure Set 4

print ("\nFigure Set 4 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_STOREN
FATES_STOREN_TF
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREN"]/ds[key]["FATES_STOREN_TF"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREN/FATES_STOREN_TF")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREN/FATES_STOREN_TF")
    
        

Figure Set 4 >>>>>>

Figure Set 5

print ("\nFigure Set 5 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_STOREC_TF
FATES_STOREN_TF
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREC_TF"]/ds[key]["FATES_STOREN_TF"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREC_TF/FATES_STOREN_TF")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREC_TF/FATES_STOREN_TF")
    
fig3 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREN"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREC/FATES_STOREN")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREC/FATES_STOREN")
    
        

Figure Set 5 >>>>>>

### *Figure Set 6*

print ("\nFigure Set 6 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

'''
vars_plot = [
"FATES_CROOT_ALLOC",
"FATES_FROOT_ALLOC",
"FATES_FROOT_ALLOC",
"FATES_SEED_ALLOC",
"FATES_STEM_ALLOC",
"FATES_STORE_ALLOC"
]

'''

vars_plot = (
"""
FATES_CROOT_ALLOC
FATES_FROOT_ALLOC
FATES_FROOT_ALLOC
FATES_SEED_ALLOC
FATES_STEM_ALLOC
FATES_STORE_ALLOC
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)


fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_FROOT_ALLOC"]/ds[key]["FATES_LEAF_ALLOC"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
    ts_data = ds[key]["FATES_L2FR"].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_L2FR")
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
   

Figure Set 6 >>>>>>

/Users/ud4/opt/anaconda3/envs/pyces/lib/python3.9/site-packages/dask/core.py:121: RuntimeWarning: invalid value encountered in true_divide
  return func(*(_execute_task(a, cache) for a in args))

<matplotlib.lines.Line2D at 0x17a5d7bb0>

Figure Set 7

print ("\nFigure Set 7 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_LEAFC
FATES_FROOTC
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_FROOTC"]/ds[key]["FATES_LEAFC"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_FROOTC/FATES_LEAFC")
    ts_data = ds[key]["FATES_L2FR"].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_L2FR")
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_FROOTC/FATES_LEAFC")
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

Figure Set 7 >>>>>>

<matplotlib.lines.Line2D at 0x17eea8b20>

Figure Set 8

print ("\nFigure Set 8 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_NO3UPTAKE
FATES_NH4UPTAKE
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
       
        

Figure Set 8 >>>>>>

<matplotlib.lines.Line2D at 0x17972fd00>

### *Figure Set 9*

print ("\nFigure Set 9 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
GROSS_NMIN
NET_NMIN
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
       
        

Figure Set 9 >>>>>>

<matplotlib.lines.Line2D at 0x183b55460>

Figure Set 10

print ("\nFigure Set 10 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
SMIN_NO3_LEACHED
DENIT
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
       
        

Figure Set 10 >>>>>>

<matplotlib.lines.Line2D at 0x17fc9a7c0>

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_FROOTC
FATES_LEAFC
FATES_NONSTRUCTC
FATES_REPROC
FATES_SAPWOODC
FATES_STOREC
FATES_STRUCTC
FATES_VEGC
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    print(var)
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

FATES_FROOTC
FATES_LEAFC
FATES_NONSTRUCTC
FATES_REPROC
FATES_SAPWOODC
FATES_STOREC
FATES_STRUCTC
FATES_VEGC

<matplotlib.lines.Line2D at 0x1833abc10>

FATES_NPP (for C-only at that site and RD/ECA) [done] FATES_NPP [done] FATES_STOREC FATES_STOREC_TF FATES_STOREN FATES_STOREN_TF FATES_STOREC_TF / FATES_STOREN_TF FATES_L2FR FATES_FROOTC_ALLOC / FATES_LEAFC_ALLOC FATES_FROOTC / FATES_LEAFC FATES_FROOTC FATES_LEAFC FATES_NO3UPTAKE FATES_NH4UPTAKE NET_NMIN GROSS_NMIN It's also be good to look at N leaching (NLEACH?) and denitrification (DENIT?). Not sure those are the variable names but the variables (however named) should be in the output files I hope. And let's take a look at PID-D for both Duke and ORNL, and PID-B for Duke.

print ("Successful run")

Successful run

Ignore the plots after this cell!